The complete, live list is maintained on Google Scholar.
2026
MB Reed, R. Zadegan, "Using Explainable Artificial Intelligence and Molecular Dynamics to Investigate Sequence Dependent Fluorescence in Single Stranded DNA," 2026.
J Zubia‐Aranburu, R. Zadegan, JV Nygaard, J Kjems, R Subramani, et al., "Quantifying Structure‐Dependent Rigidity of 3D DNA Origami Boxes," Advanced Intelligent Systems, 2026, e70517.
2025
M Bahadorani, K Wu, J Wei, R. Zadegan, "Exploring Carbon Dot Nanoparticles for Imaging and Cellular Interaction in Triple-Negative Breast Cancer Cells," International Journal of Nanomedicine, 2025, 14823–14835.
M Reed, R. Zadegan, "Predicting Sequence Dependent Fluorescence with Classic Machine Learning Models," ChemRxiv, 2025 (1223).
MB Reed, R. Zadegan, "Assessing Knowledge Distillation of a Multi-Emitter Localizing Neural Network for Super-Resolution Microscopy," bioRxiv, 2025.
M Nasiri, K Nowlin, R. Zadegan, "Developing a Modular Platform for the Detection of microRNAs Using Rolling Circle Amplification," Journal of Molecular Recognition, 2025, 38 (6), e70013.
R. Zadegan, JE Guerrero, "Molecular file system," US Patent App. 19/189,507, 2025.
M Ebrahimian, M Reed, R. Zadegan, "Dynamic DNA nanorobots for transcriptional control and targeted therapeutic delivery," Synthetic Biology: Engineering, Evolution, & Design (SEED), 2025.
M Reed, R. Zadegan, "Investigating the Super Resolution Performance of a Simple Convolutional Neural Network for DNA-PAINT," Synthetic Biology: Engineering, Evolution, & Design (SEED), 2025.
MH Raza, M Ebrahimian, M Reed, M Olowe, P Jackson, S Aravamudhan, R. Zadegan, "Microfluidic DNA Data Storage Architecture with Multiplexed Random Access and Dynamic Operations," Synthetic Biology: Engineering, Evolution, & Design (SEED), 2025.
2024
M Bahadorani, M Nasiri, K Dellinger, S Aravamudhan, R. Zadegan, et al., "Engineering exosomes for therapeutic applications: decoding biogenesis, content and targeting," International Journal of Nanomedicine, 2024, 7137–7164.
MH Raza, M Ebrahimian, M Reed, M Olowe, P Jackson, S Aravamudhan, R. Zadegan, "Combinatorial multiplexing enhanced high throughput microfluidic DNA random access," 1st International SynBYSS Conference, 2024.
M Ebrahimian, J Guerrero, M Reed, R. Zadegan, "Precision targeting and enhanced therapeutic delivery using DNA nanorobots," 1st International SynBYSS Conference, 2024.
R. Zadegan, "Programmable DNA for Synthetic Biology," 1st International SynBYSS Conference, 2024.
H Raza, S Riddick, W Calmday, E Hou, S Goodrich, D Shrayber, R. Zadegan, et al., "Additive Manufacturing Enabled Monolayer Chambers for Immune Cells' Communication," International Workshop on Biodesign Automation (IWBDA), 2024.
M Nasiri, R. Zadegan, "Sensitive detection of triple-negative breast cancer-related microRNAs using purified DNA nanorobots," SuRE Biennial'24, 2024.
M Bahadorani, MB Reed, A Anele, L Webster, K Nowlin, S Crawford, R. Zadegan, et al., "Rapid Elimination Hindering Exosome-Assisted Carbon Dot Delivery," SuRE Biennial'24, 2024.
M Ebrahimian, JE Guerrero, MB Reed, Y Johri, R. Zadegan, "Optimizing DNA nanostructures' design to advance targeted gene delivery," SuRE Biennial'24, 2024.
R. Zadegan, "Unconventional DNA based engineered technologies," SuRE Biennial'24, 2024.
M Reed, R. Zadegan, "Towards Sequence Parameterized Simulations of DNA-PAINT," Foundations of Nanoscience (FNANO), 2024.
P Jackson, M Reed, R. Zadegan, "Robust Bio-Secure DNA Based Memory," Foundations of Nanoscience (FNANO), 2024.
H Tajadini, JJLM Cornelissen, R. Zadegan, H Ravan, "An approach for state differentiation in nucleic acid circuits: Application to detection of BRCA1 related microRNA," Analytica Chimica Acta, 2024, 1294, 342266.
M Nasiri, M Bahadorani, K Dellinger, S Aravamudhan, JL Viveros-Escoto, R. Zadegan, et al., "Improving DNA nanostructure stability: A review of the biomedical applications and challenges," International Journal of Biological Macromolecules, 2024, 260, 129446.
2023
MH Raza, S Desai, S Aravamudhan, R. Zadegan, "An outlook on the current challenges and opportunities in DNA data storage," Biotechnology Advances, 2023, 66, 108155.
GM Mortuza, J Guerrero, S Llewellyn, MD Tobiason, GD Dickinson, R. Zadegan, et al., "In-vitro validated methods for encoding digital data in deoxyribonucleic acid (DNA)," BMC Bioinformatics, 2023, 24 (1), 160.
A Sadremomtaz, RF Glass, JE Guerrero, DR LaJeunesse, EA Joseph, R. Zadegan, et al., "Digital data storage on DNA tape using CRISPR base editors," Nature Communications, 2023, 14, 6472.
2022
W Hughes, E Graugnard, W Kuang, T Andersen, E Hayden, R. Zadegan, "Nucleic acid memory (NAM)/digital nucleic acid memory (dNAM)," US Patent App. 17/443,312, 2022.
2021
GD Dickinson, GM Mortuza, W Clay, L Piantanida, CM Green, C Lidl, R. Zadegan, et al., "An alternative approach to nucleic acid memory," Nature Communications, 2021, 12 (1), 2371.
2020
WP Klein, BS Rolczynski, SM Oliver, R. Zadegan, S Buckhout-White, et al., "DNA origami chromophore scaffold exploiting HomoFRET energy transport to create photonic circuits," ACS Applied Nano Materials, 2020, 3 (4), 3323–3336.
2019
M Bathe, LA Chrisey, DJC Herr, Q Lin, D Rasic, AT Woolley, R. Zadegan, V. Zhirnov, "Roadmap on biological pathways for electronic nanofabrication and materials," Nano Futures, 2019, 3 (1), 012001.
2018
DK Prusty, V Adam, R. Zadegan, S Irsen, M Famulok, "Supramolecular aptamer nano-constructs for receptor-mediated targeting and light triggered release of chemotherapeutics into cancer cells," Nature Communications, 2018, 9 (1), 1–14.
R. Zadegan, EG Lindau, WP Klein, C Green, E Graugnard, B Yurke, W Kuang, WL Hughes, "Twisting of DNA origami from intercalators," Scientific Reports, 2017, 7 (1), 1–5.
K Suyehira, S Llewellyn, R. Zadegan, WL Hughes, T Andersen, "A Coding Scheme for Nucleic Acid Memory (NAM)," 2017 IEEE Workshop on Microelectronics and Electron Devices (WMED), 2017.
CM Green, K Schutt, N Morris, R. Zadegan, WL Hughes, W Kuang, E Graugnard, "Metrology of DNA arrays by super-resolution microscopy," Nanoscale, 2017, 9 (29), 10205–10211.
2016
V Zhirnov, R. Zadegan, GS Sandhu, GM Church, WL Hughes, "Nucleic acid memory," Nature Materials, 2016, 15 (4), 366–370.
2015
Z Jiang, S Zhang, C Yang, J Kjems, Y Huang, F Besenbacher, M Dong, R. Zadegan, "Serum-induced degradation of 3D DNA box origami observed with high-speed atomic force microscopy," Nano Research, 2015, 8 (7), 2170–2178.
R. Zadegan, MDE Jepsen, LL Hildebrandt, V Birkedal, J Kjems, "Construction of a fuzzy and Boolean logic gates based on DNA," Small, 2015, 11 (15), 1811–1817.
2012
R. Zadegan, MDE Jepsen, KE Thomsen, AH Okholm, DH Schaffert, ES Andersen, V Birkedal, J Kjems, "Construction of a 4 zeptoliters switchable 3D DNA box origami," ACS Nano, 2012, 6 (11), 10050–10053.
R. Zadegan, ML Norton, "Structural DNA nanotechnology: from design to applications," International Journal of Molecular Sciences, 2012, 13 (6), 7149–7162.
S Farshad, R Ranjbar, A Japoni, M Hosseini, M Anvarinejad, R. Zadegan, "Microbial Susceptibility, Virulence Factors, and Plasmid Profiles of Uropathogenic Escherichia Coli Strains Isolated from Children in Jahrom, Iran," AIM, 2012, 15 (5), 312–316.
2011
Z Zhang, EM Olsen, M Kryger, NV Voigt, T Tørring, E Gültekin, M Nielsen, R. Zadegan, ES Andersen, J Kjems, V Birkedal, KV Gothelf, "A DNA tile actuator with eleven discrete states," Angewandte Chemie, 2011, 123 (17), 4069–4073.
K Jahn, EM Olsen, MM Nielsen, T Tørring, R. Zadegan, ES Andersen, KV Gothelf, J Kjems, "Site-specific chemical labeling of long RNA molecules," Bioconjugate Chemistry, 2011, 22 (1), 95–100.
S Farshad, M Anvarinejad, AM Tavana, R Ranjbar, A Japoni, R. Zadegan, A Alborzil, "Molecular Epidemiology of Escherichia Coli Strains Isolated from Children with Community Acquired Urinary Tract Infections," AJMR, 2011, 5 (26), 4476–4483.
2008
R. Zadegan, H Mohabatkar, MH Sheikhi, A Safavi, MB Khajoueee, "DNA-Templated Gold Nanowires," Physica E: Low-dimensional Systems and Nanostructures, 2008, 41 (1), 142–145.
